FastQCFastQC Report
Wed 31 May 2023
EGAF00007948719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456568
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19220.42096686583378595No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17700.38767500131415256No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17320.37935203518424415No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15410.33751817911023113No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13110.28714233148183843No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12090.2648017381857686No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11400.24968898389725078No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC9580.20982635664347918No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8870.1942755515060188No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8340.18266720400904138No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7690.16843055141840865No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7360.16120271241085665No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7000.15331779712989085No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6930.15178461915859193No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6930.15178461915859193No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6880.15068949203623558No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6380.13973822081267193No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6220.13623381402113158No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6020.13185330553170613No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5630.12331131397732649No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5580.12221618685497011No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5440.11914983091237231No Hit
CGCCTGCTGGAATGCCGTTTTCAGCAGGAAC5250.11498834784741813No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5120.11214101732929158No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4680.10250389865255559No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4680.10250389865255559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)