FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450719
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT106132.354682185574604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22840.5067458882363512No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC20290.450169617877214No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16670.3698535007399289No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14090.3126116272000959No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12750.2828813517956864No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12690.28155014543429496No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12670.28110640998049785No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12580.2791096004384106No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11800.2618039177403216No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11130.2469387800381169No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10210.22652694916344773No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10200.22630508143654918No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9300.20633698601567715No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8890.1972404092128355No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8640.19169371604037105No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7830.17372243016158626No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7760.17216935607329623No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7280.1615197051821645No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7110.15774795382488868No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7040.15619487973659862No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6980.15486367337520715No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6400.14199534521508966No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6320.14022040339990105No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6280.13933293249230674No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5970.13245503295845085No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5920.13134569432395796No Hit
GACTCCGAAGGCCACAGCGAGGACTCTGATA5690.12624273660529065No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5290.11736802752934757No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5090.11293067299137599No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4980.11049012799549164No Hit
ATGAAACCGCGCGCGCGTCGCCGTAAACGTG4950.1098245248147959No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4880.10827145072650587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)