FastQCFastQC Report
Wed 31 May 2023
EGAF00007948727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446500
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36860.825531914893617No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17070.38230683090705486No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12840.28756998880179174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11750.2631578947368421No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11630.2604703247480403No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11530.2582306830907055No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10820.24232922732362822No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10060.22530795072788357No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9800.21948488241881298No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8580.1921612541993281No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7670.1717805151175812No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7640.17110862262038073No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7380.1652855543113102No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7230.16192609182530796No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7130.15968645016797314No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6200.13885778275475924No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6120.13706606942889138No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5710.1278835386338186No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5470.122508398656215No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4790.10727883538633819No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4760.10660694288913773No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4680.10481522956326987No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4550.1019036954087346No Hit
GCAGCAACCAAAACCACCCGCACCGCTGCTA4500.1007838745800672No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4480.10033594624860023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)