FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452065
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18030.3988364505104354No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15810.34972846825124704No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15620.34552553283266785No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12200.2698726952982425No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12100.2676606240253061No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10140.2243040270757524No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9700.21457091347483215No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8580.1897957152179443No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8290.1833807085264287No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8230.18205346576266687No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7530.16656896685211198No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7080.1566146461238981No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6480.14334221848627962No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6430.1422361828498114No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5860.12962737659407386No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5550.12276995564797098No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5360.11856702022939179No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5310.11746098459292358No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5300.11723977746562993No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5070.1121520135378762No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4580.10131286430048778No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG4560.10087045004590048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)