FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466982
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC9270.19850872196358746No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8440.18073501762380564No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8120.17388250510726322No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7470.1599633390580365No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG7290.1561088007674814No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6750.1445451858958161No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4980.106642226038691No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG4890.10471495689341344No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4890.10471495689341344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)