FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470606
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15380.3268126628219785No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15300.32511272699455596No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12420.26391503720734544No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7850.16680620306583427No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6310.13408243838795084No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5850.1243078073802714No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5800.12324534748813232No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5690.12090793572542635No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5430.1153831442863032No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5180.11007084482560782No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5110.10858340097661315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)