FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470606
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29970.6368384593481596No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21670.46047011725307374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15010.31895045962014934No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14850.3155505879653043No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12010.25520286609180504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10220.2171668019532263No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7280.15469416029544886No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5660.12027045979014293No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5110.10858340097661315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)