FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463500
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8560.18468176914778858No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8540.1842502696871629No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6510.14045307443365695No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC5060.10916936353829558No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4980.1074433656957929No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC4920.10614886731391586No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC4770.10291262135922331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)