FastQCFastQC Report
Sun 21 May 2023
EGAF00007948736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479998
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC34110.7106279609498373No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC29710.6189609123371348No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT22850.4760436501818757No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15910.3314597144154767No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG15880.3308347118112992No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15700.3270846961862341No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG15560.324168017366739No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA15390.32062633594306644No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA14530.30270959462331093No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14360.2991679131996383No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC9890.20604252517718824No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8920.1858341076421152No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG7700.16041733507222947No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7380.15375064062766927No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7190.14979229080121167No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6260.13041721007170862No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6250.13020887587031613No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5680.11833382639094328No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC5590.11645881857841076No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5530.1152088133700557No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTG5340.1112504635435981No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5330.11104212934220559No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5150.10729211371714048No Hit
CGGGATCGGGGTTTTAGACATTTCGAAGCTCACGTTAATGT5120.10666711111296298No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5040.10500043750182292No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4910.10229209288372035No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA4890.10187542448093533No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4850.10104208767536531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)