FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497493
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCA44750.8995101438613207No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT22110.44442836381617434No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18660.37508065440116745No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15970.3210095418427998No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT12690.2550789659351991No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT11730.23578221201102328No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10250.20603304971125222No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8570.17226373034394454No Hit
CAGCGCGTCACGCTGTTCCGGCACACGAACTTCGAAAGACT6470.13005208113480993No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6320.12703696333415745No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6240.1254289005071428No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5960.11980068061259153No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5040.10130795810192304No Hit
GCGCTGACCCGCGTGCGGTTCGACTTTGTTGGTGTTGTTGT5020.10090594239516937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)