FastQCFastQC Report
Wed 31 May 2023
EGAF00007948739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497493
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCGGTCAGAAAGCCAAATCTAACCCGAAC45550.9155907721314672No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT36130.726241374250492No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23530.4729714789956843No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC21730.4367900653878547No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15500.3115621727340887No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14110.28362208111470916No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13230.265933390017548No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG12890.25909912300273574No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT11860.23839531410492207No Hit
GCCGATAGCCTGGAGCGTGACCTGGATGCCCCA6720.1350772774692307No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5470.1099512957971268No Hit
AAACCGCGTGTAACCCGTTCCGCGGACGTTGCC5130.10311702878231452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)