FastQCFastQC Report
Sun 21 May 2023
EGAF00007948740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494007
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG26750.541490302768989No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT22950.4645683158335813No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT20570.4163908608582469No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT20070.40626954678779853No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT19920.40323315256666403No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT18980.38420508211422105No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT14830.3001981753294994No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT13560.27449003759056045No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGG13360.2704415119623811No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT12770.258498361359252No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11540.23359992874594895No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT11050.22368104095690952No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT9640.19513893527824505No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8550.17307447060466755No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT8370.16943079753930612No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8290.16781138728803438No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT8100.16396528794126397No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT7140.14453236492600308No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC6540.132386788041465No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6390.12935039382033048No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6340.12833826241328566No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTT6030.12206304768960763No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5910.11963393231270003No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT5480.1109296022121144No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGT5390.1091077656794337No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5130.10384468236280053No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4960.10040343557884807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)