FastQCFastQC Report
Wed 31 May 2023
EGAF00007948741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494007
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT34990.7082895586499787No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC23560.47691631899952835No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC22750.4605197902054019No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT21690.4390626043760513No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG21380.4327873896523733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC20730.41962968136079043No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC15580.315380146435172No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT14870.30100788045513527No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG14270.28886230357059717No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT13060.2643687235201121No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT11800.2388630120625821No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC11270.2281344191479068No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA10680.2161912685447777No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA10000.20242628140896787No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9360.18947099939879394No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC9270.18764916286611324No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA8340.16882351869507922No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT7880.15951190975026672No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA7480.15141485849390798No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT7060.14291295467473134No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6630.1342086245741457No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT6150.12449216306651524No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC6150.12449216306651524No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA6030.12206304768960763No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5880.1190266534684731No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5840.11821694834283725No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5830.11801452206142828No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG5520.11173930733775028No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5250.10627379773970815No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5200.10526166633266332No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5190.10505924005125435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)