FastQCFastQC Report
Sun 21 May 2023
EGAF00007948742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445910
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA27790.6232199322733287No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG24500.549438227445No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14990.33616649099594087No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13160.29512681931331436No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11920.2673185171895674No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11630.2608149626606266No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10500.2354735260478572No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8700.19510663586822455No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8570.19219124935525106No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC8360.1874817788342939No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG7960.17851135879437555No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6840.1533941826826041No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6570.1473391491556592No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6460.14487228364468166No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6360.14262967863470208No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6340.14218115763270614No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6250.14016281312372453No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6240.13993855262272656No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6110.1370231661097531No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCAC6040.13545334260276737No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5550.12446457805386738No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5550.12446457805386738No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5500.12334327554887757No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5480.12289475454688166No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG5270.11818528402592451No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5150.11549415801394901No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4730.10607521697203473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)