FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445910
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG62581.403422215245229No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29360.6584288309300083No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20770.46578906057276137No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15710.35231324706779393No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12550.2814469287524388No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11490.2576753156466552No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10850.24332264358278574No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10550.236594828552847No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9530.21372025745105516No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT8920.20004036689017962No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA8170.18322082931533268No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7580.1699894597564531No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6640.1489089726626449No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6550.1468906281536633No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6540.14666636765266533No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6210.13926577111973268No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5990.13433204009777758No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTAAC5970.13388351909578167No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5720.12827700657083269No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5550.12446457805386738No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC5400.12110067053889798No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5300.1188580655289184No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4630.10383261196205514No Hit

[OK]Adapter Content

Adapter graph