FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468663
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22780.486063546727606No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9920.21166595186733325No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8140.17368556937500934No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA7120.15192152996929564No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG6890.14701395245624255No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6750.14402673136134067No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6210.13250459285243343No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5740.12247606489097711No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC5640.12034233553747575No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5490.11714174150722373No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5230.11159404518812026No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5170.11031380757601944No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4770.10177889016201407No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGGGT4710.10049865254991328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)