FastQCFastQC Report
Wed 31 May 2023
EGAF00007948746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467568
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10430.22306915785511414No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC10170.21750846935632892No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8750.18713855524757897No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8250.17644492351914587No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT7800.1668206549635561No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7650.16361256544502617No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7570.16190158436847688No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6850.14650275467953325No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT6440.13773397666221812No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6250.13367039660541355No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCG6110.13067617972145226No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5560.11891318482017588No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5540.11848543955103857No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5510.11784382164733258No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5480.11720220374362658No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5290.11313862368682202No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5060.1082195530917428No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5050.10800568045717415No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG5000.10693631728433083No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4810.10287273722752625No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4780.10223111932382027No Hit

[OK]Adapter Content

Adapter graph