FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467568
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22200.4747972487424289No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19600.4191903637545769No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11400.2438148034082743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10300.2202888136057215No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC10130.2166529788180543No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7880.1685316360401054No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT7340.15698251377339767No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6720.14372241043014064No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6620.14158368408445401No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC6450.13794784929678677No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6410.1370923587585121No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6080.1300345618177463No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6060.12960681654860898No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6020.12875132601033432No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAGAT5940.12704034493378505No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5940.12704034493378505No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5920.12661259966464772No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5850.12511549122266707No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5530.11827156691646991No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG5440.11634671320535195No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA5170.11057215207199808No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5110.1092889162645861No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4850.1037282277658009No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4770.10201724668925162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)