FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446353
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12940.2899050751311182No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11120.24913017275564409No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9050.20275432225167075No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9030.20230624640139083No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8250.18483128824047335No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTAC8070.1807986055879539No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7290.16332364742703645No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7230.16197941987619666No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7090.1588428889242371No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7070.15839481307395717No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6760.15144963739461817No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6070.1359910205599604No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5800.12994199658118127No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5550.12434104845268207No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT4780.10709012821690454No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG4580.1026093697141052No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG4550.1019372559386853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)