FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506737
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG44010.8684978598365622No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23570.4651328006441211No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15670.3092333893124047No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8050.15885952673674905No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7360.14524299587359912No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7170.14149351636055785No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6460.12748230344340358No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6400.12629825728139055No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5600.11051097512121673No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5460.1077482007431863No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5430.10715617766217979No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5300.10459074431115153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)