FastQCFastQC Report
Wed 31 May 2023
EGAF00007948758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453857
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7490.16502995436888712No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6720.14806425812535667No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6000.13220023046906845No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5360.11809887255236783No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5280.11633620281278025No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5130.11303119705105352No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG4600.10135351002628581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)