FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453857
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15920.3507712781779283No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7560.16657229039102625No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7510.16547062180378402No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6180.13616623738314051No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5920.13043756072948087No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5880.12955622585968707No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5610.12360721548857899No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5500.12118354459664608No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4950.10906519013698147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)