FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525575
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12680.24125957284878463No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12150.2311753793464301No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10900.20739190410502784No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10530.20035199543357277No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9650.18360842886362555No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6390.12158112543404842No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC6160.11720496598963041No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5980.11378014555486848No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5290.10065166722161441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)