FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476197
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10820.22721688712864632No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10410.21860700508403033No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7060.14825796886582654No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6910.14510801202023532No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6450.13544814436042227No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6210.13040821340747633No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5980.12557827957756978No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5680.11927836588638736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)