FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465964
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11470.24615635542659947No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG10320.2214763372277687No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA10230.2195448575426428No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9860.21160432994823636No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9740.2090290237014018No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8180.17555004249255307No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG7950.1706140388527869No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7820.1678241237520495No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG7720.16567803521302074No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6600.14164184357589857No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6460.13863731962125828No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6350.13627662222832665No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT6260.13434514254320076No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6100.13091140088075476No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5810.12468774411757132No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5710.12254165557854255No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5190.11138199517559295No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4670.10022233477264338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)