FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473771
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16700.3524909713764667No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14190.2995117894510217No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11730.2475879697153266No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG10390.21930426303002928No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG9380.19798594679708129No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8950.18890983196523214No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8220.1735015439948836No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5870.12389952107663829No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5650.11925592744173874No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5310.11207946455143941No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5230.11039088504783956No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5230.11039088504783956No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5140.10849123310628975No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5120.1080690882303898No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5080.10722479847858986No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG4820.10173691509189038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)