FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298574
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9320.31215042167100954No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6230.20865849002257397No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG4630.15507043480008306No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4160.13932894357847636No Hit
CAGGGTATCGTGTGCGTAAGTATCGTTGTCGTTGAACAGGA3620.12124297494088566No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT3530.11822864683462056No Hit
TCAGCATTTACCGAAGTGAGACAGGGTCAGGGTGCCGTTAG3530.11822864683462056No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA3370.11286984131237147No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTT3110.10416178233871669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)