FastQCFastQC Report
Sun 21 May 2023
EGAF00007948771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298574
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14160.4742542887190445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9410.3151647497772746No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6360.21301251950940134No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5690.1905725213849833No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5170.17315640343767374No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT4670.15641013618064534No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT4580.15339580807438022No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC3950.13229551133052442No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC3550.11889849752490171No Hit
CTGGTTGATGAAGGTAAAGTCGATCTGGACGCT3550.11889849752490171No Hit
GTGAGCGTAGACTGCTCCGAATACCCAAAACCG3350.11219999062209032No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTTCT3100.10382685699357613No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC3070.10282208095815443No Hit
GCTGAAACCGGCGAAACCAAAATTGTTGAGCTG3030.10148237957759215No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC3020.10114745423245158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)