FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441332
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9760.22114870437675038No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9090.20596738962957592No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8340.18897338058423135No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6610.1497738663863033No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6540.14818775887540445No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6300.1427496759808942No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGT6280.14229650240635167No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6180.1400306345336391No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6140.13912428738455404No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4730.10717555037930628No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4710.10672237680476376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)