FastQCFastQC Report
Sun 21 May 2023
EGAF00007948774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535912
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18390.3431533535356551No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG16700.3116183253967069No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13630.25433280090761173No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9920.1851050172416367No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5800.10822672379047307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)