FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535912
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG42490.7928540506650347No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25670.4789965516726627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13150.24537610652495184No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT10110.18865037543477287No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6510.12147516756482407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)