FastQCFastQC Report
Wed 31 May 2023
EGAF00007948776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465924
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAACGATGCCTTCCTCCACTGCAGCACGGGTCGCGTGCA5920.1270593487349868No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5510.1182596303259759No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5380.11546947570848463No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4900.10516736635159384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)