FastQCFastQC Report
Wed 31 May 2023
EGAF00007948777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465924
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8630.18522334114576627No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8030.17234570444965275No Hit
CGTGAAGCCATTAAGGATACCACTTCCGACTAC6060.13006413063074665No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5780.124054566839227No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5720.12276680316961565No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5660.1214790395000043No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5570.11954739399558725No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5180.11117693014311347No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4940.10602587546466806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)