FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452475
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20690.45726283220067404No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8400.18564561577987734No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8400.18564561577987734No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5650.12486877728051275No Hit
CGTGAAGCCATTAAGGATACCACTTCCGACTAC5410.11956461682965909No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5410.11956461682965909No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5140.11359743632244874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4800.10608320901707277No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4730.10453616221890712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)