FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527641
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG88311.6736758515733234No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28240.5352123887264257No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23490.4451890584696792No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17430.33033824134212464No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16060.3043736176680736No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12780.24221013909078332No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10260.19445039335457254No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9600.18194188851889825No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9600.18194188851889825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9000.17057052048646712No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8930.1692438608826835No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8710.1650743592707921No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8350.15825153845133338No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6820.12925454996863397No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6740.12773836756430984No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6320.11977840994160803No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6020.11409272592539245No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5610.10632229110323119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)