FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560022
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26040.46498173286049477No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23060.4117695376253076No Hit
GAAGTGACCAATACGGGCCGGACGACGCTGCGGTACGGTAGCTG15640.27927474277796227No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15520.27713196981547156No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15500.2767748409883897No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14830.26481102528114964No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13310.2376692344229334No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12600.22499116106152972No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12520.22356264575320253No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11110.19838506344393614No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10120.18070718650338738No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10100.18035005767630558No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10030.17910010678151927No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9850.17588594733778315No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9730.1737431743752924No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9570.17088614375863803No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8050.14374435290042176No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7930.141601579937931No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7910.1412444511108492No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7330.1308877151254772No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7230.12910207099006824No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6870.12267375210259597No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6520.11642399762866458No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6450.11517404673387832No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6350.11338840259846936No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6230.11124562963597859No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6050.10803147019224245No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5710.10196028013185196No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5690.10160315130477017No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5640.10071032923706569No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5620.10035320040998388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)