FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560022
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG84421.5074407791122493No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30340.5417644306830803No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26690.476588419740653No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23030.4112338443846849No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17520.31284485252365085No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16540.295345539996643No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16450.2937384602747749No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16090.28731014138730265No Hit
ATGGAAAAAACCCCGGCAGAAACTACCGCCG15300.27320355271757185No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13000.2321337376031656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12360.2207056151365482No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11490.2051705111584902No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10850.1937423886918728No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10410.18588555449607336No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10190.18195713739817365No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10060.179635800022142No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9950.17767159147319211No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9000.16070797218680694No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8660.15463678212641646No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8490.15160118709622122No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8350.14910128530664868No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8280.14785133441186238No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8180.1460656902764534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8130.14517286820874895No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7280.12999489305777273No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7090.1266021692004957No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6950.12410226741092313No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6800.12142380120780968No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6390.11410266025263292No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6100.10892429225994693No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6070.10838859901932424No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5820.10392448868080183No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5700.10178171571831106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)