FastQCFastQC Report
Sun 21 May 2023
EGAF00007948791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553257
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT72501.3104217389025352No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30220.5462199303397878No Hit
ATGTCCAACATGGACATCGATGGTATTAACA28870.5218189738222924No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16110.2911847477754461No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13880.25087798256506466No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13620.24617853908762113No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11340.20496803474696207No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG10060.18183231301185526No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8710.15743135649435977No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8520.15399714779930485No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC8100.14640573910497293No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7940.14351377388808456No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7910.142971530409918No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7740.13989881736697413No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7680.13881433041064098No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7180.1297769391078649No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6630.11983580867481115No Hit
CGCGAAATTATGAAACGTGACTTTCCGACCG6520.11784758258820043No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6210.11224439998047925No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6130.11079841737203507No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5790.1046529912861473No Hit
AGCCGTCGCCTGGATGACTATTCTCTGGAAC5610.1013995304171479No Hit

[OK]Adapter Content

Adapter graph