FastQCFastQC Report
Sun 21 May 2023
EGAF00007948793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553057
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG77711.4050992935628697No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15430.27899475099311644No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12840.23216413498066205No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7970.14410811182210875No Hit
ATGACCAGCCTGCAGCTGCCGTCCTCCCCGA6020.10884953992084No Hit
ATGAACCCAAACGATCTGGCAGATGAACTGG5730.103605957432959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)