FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526234
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31860.6054340844567246No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28860.5484252252800085No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14190.26965190390586696No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13080.248558626010482No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11160.21207295613738375No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9310.17691749297840884No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7680.14594267949239312No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6440.12237901769935047No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6080.11553795459814456No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5500.10451624182397945No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5450.10356609417103417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)