FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463846
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT18610.40121074667023104No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14960.32252083665699394No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13090.2822057320748697No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10900.23499178606692736No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9350.2015755229106212No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8630.18605312970253057No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8340.179801054660383No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6310.1360365293653497No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6270.13517417418712244No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG5980.12892209914497485No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5750.12396355687016812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)