FastQCFastQC Report
Sun 21 May 2023
EGAF00007948803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463846
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG77161.6634831388003777No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24310.5240963595676151No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT19540.42126050456401476No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14650.3158375840257327No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13880.299237246844858No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8250.17786075550937164No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7940.1711775028781104No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6230.1343118190088952No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5890.1269817999939635No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5770.12439473445928174No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5730.12353237928105448No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4960.1069320421001798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)