FastQCFastQC Report
Sun 21 May 2023
EGAF00007948810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462336
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10590.22905419435215948No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9470.20482938815060908No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8950.19358215669988926No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6850.1481606450719823No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6560.14188815060908083No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6210.13431789867109634No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5860.12674764673311184No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5360.11593300110741972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)