FastQCFastQC Report
Sun 21 May 2023
EGAF00007948816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463593
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30380.6553161932988635No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21550.4648473984723669No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19470.41998045699568376No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT17290.3729564510249292No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13700.29551783568776924No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13630.29400789054191934No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12470.2689859424106921No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10930.235767149201994No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10650.22972736861859433No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10150.2189420461482378No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10030.21635356875535222No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9630.20772531077906697No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8840.19068450127590367No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8110.1749379304691831No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8050.1736436917727403No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7690.16587825959408362No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7460.1609170112577196No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7430.1602698919094982No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG7410.15983847901068393No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7040.1518573403826201No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6990.15077880813558445No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6950.14991598233795594No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6920.14926886298973452No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6770.14603326624862756No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6510.14042489856404217No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6290.1356793566770853No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG6160.13287517283479258No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5940.12812963094783572No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5910.1274825115996143No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5730.12359979551028596No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5500.11863854717392196No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG5480.11820713427510769No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5450.11756001492688631No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5250.11324588593874368No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4980.10742181180475115No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4640.10008779252490871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)