FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466775
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46080.9871994001392534No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30940.6628461250066948No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26200.561298270044454No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25870.554228482673665No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20350.4359702211986503No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17820.38176851802260187No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17660.37834074232767395No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14880.31878313962830057No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12100.25922553692892725No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12090.25901130094799424No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11340.2429436023780194No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11140.23865888275935943No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10290.22044882438005461No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9950.2131648010283327No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9050.19388356274436291No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8670.185742595468909No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8070.17288843661292913No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7800.1671040651277382No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC7590.16260510952814525No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7560.16196240158534625No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7520.16110545766161427No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7460.15982004177601628No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7200.15424990627175833No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA7140.15296449038616036No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6940.1486797707675004No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6750.14460928712977345No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG6670.1428953992823095No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6530.1398960955492475No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG6190.13261207219752558No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5950.12747040865513365No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5650.1210433292271437No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5580.11954367736061271No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5470.11718708157034974No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4890.10476139467623588No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4850.10390445075250387No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4790.10261903486690589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)