FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468577
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13430.28661244576665096No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10380.2215217562961904No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7990.17051626520294422No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7170.15301647327973844No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5130.10948040556834843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)