FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455128
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26790.588625617408729No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22330.49063120704505103No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17510.384726933961435No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16550.3636339667082667No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13940.30628746198871526No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11880.2610254697579582No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11800.25926772248686086No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9820.21576347752720113No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9460.20785361480726303No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7910.17379726142975163No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC7410.16281134098539313No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7110.156219788718778No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6900.15160570213214744No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6720.14765077077217836No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6480.14237752895888628No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6280.13798316078114287No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6060.13314935578562515No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5470.1201859696612821No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5450.11974653284350775No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5110.11227610694134398No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5090.11183667012356963No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4860.10678314671916471No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)