FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464232
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG20410.4396508642230608No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT17900.38558307053369867No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT16490.35521032587154694No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14400.310189732719847No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11100.23910458563821535No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10880.23436557583277326No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10710.2307036137103862No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10400.22402591807544506No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10280.221441003636113No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10120.21799445105033688No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9740.20980888865911873No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9420.2029157834875666No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9070.19537644970618137No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9040.19473022109634838No Hit
CATGGAGTCCTGCAGCGGCATCGGCGGAGGCGGGAAGCGGGTTG8920.19214530665701632No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8610.18546761102207518No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG8100.17448172465491393No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7040.15164831377414742No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6800.1464784848954833No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6680.14389357045615123No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6540.14087783694359718No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6460.1391545606507091No Hit
CATAGAGTCCTGCAGCGGCATCGGCGGCGGCGGGAAACGGGTCG6370.1372158748212101No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6250.13463096038187802No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6180.13312309362560099No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5870.12644539799065985No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5830.12558375984421583No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5670.12213720725843975No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5440.11718278791638663No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5200.11201295903772253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)