FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464232
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26400.5686811766530528No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21410.46119181788416136No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC19420.4183253200985714No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18570.40001550948663595No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT17270.37201226972720536No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT16870.36339588826276514No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11950.2574143962501508No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11740.2528907959813197No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10950.2358734425890503No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10910.23501180444260628No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10700.2304882041737752No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10680.23005738510055318No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10520.2266108325147771No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9920.2136862603181168No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCAC9220.19860759275534645No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9180.19774595460890243No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8130.17512795326474695No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7890.16995812438608282No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7800.16801943855658377No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7190.1548794568233125No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7150.15401781867686845No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6440.13872374157748713No Hit
CCGCACCTGCAGAGCGAAACCGGTCCGCCGC6310.13592341760154406No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6200.133553912698823No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6190.133338503162212No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6180.13312309362560099No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6170.13290768408898998No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6000.1292457219666029No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5720.12321425494149477No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5580.1201985214289407No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5200.11201295903772253No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5110.11007427320822347No Hit
GGTCACGGTCAGGACCAGGTTAGCCAGTTCC5010.10792017784211343No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4890.10533526340278138No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4820.10382739664650434No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4810.10361198710989333No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4670.10059625359733926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)