FastQCFastQC Report
Wed 31 May 2023
EGAF00007948826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474497
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21290.4486856608155584No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20410.4301397058358641No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG18790.39599828871415416No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16020.3376206804257983No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15910.3353024360533365No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14940.31485973567799164No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11830.2493166447838448No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11790.24847364683022233No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT11780.2482628973418167No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT11750.24763064887659983No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11420.24067591575921451No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10170.2143322297085124No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9280.1955755252404125No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG9090.19157128496070577No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8950.18862079212302713No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8830.18609179826215974No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8610.18145530951723615No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT8550.18019081258680245No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8510.17934781463317997No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8140.17155008356217216No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7630.1608018596534857No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7360.15511162346653404No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6710.14141290672016893No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6020.12687119202018138No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT5900.12434219815931397No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5880.12392069918250273No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5800.12223470327525779No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG5630.11865196197236232No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5450.1148584711810612No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG5300.11169722885497695No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5000.10537474420280846No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4920.10368874829556352No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4800.1011597544346961No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4790.1009490049462905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)